Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0518
(488 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 47 1e-05
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 47 1e-05
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 47 1e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 46 4e-05
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 44 1e-04
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 44 1e-04
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 44 1e-04
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 44 1e-04
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 44 1e-04
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 44 1e-04
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 44 1e-04
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 44 1e-04
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 44 1e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 43 3e-04
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 42 3e-04
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 41 0.001
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 40 0.001
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 39 0.003
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 39 0.003
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 39 0.003
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 39 0.003
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 38 0.006
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 38 0.010
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 36 0.030
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 33 0.16
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 48 LCHVFNTCIDSGIFPTVFKKALVHPIHKNG-DKMNITNYRPISVLSTLSKIFE 203
+C +FN G FP +KK+ + I K G DK ++YRPIS+L+ LSK+FE
Sbjct: 471 ICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFE 523
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GT + +TS I ++ AIFLD+++A D V + LL K+
Sbjct: 543 HQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKI 597
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHKNG-DKMNITNYRPISVLSTLSKIFE 203
+FN+ +D G FP +K A + IHK G ++ +YRPIS+L +L KI E
Sbjct: 282 IFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPISLLPSLGKIME 331
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 263 QYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSK 421
Q+GFR GT + + + LE + NK + FLD+ +A D V P LL K
Sbjct: 352 QFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYK 404
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 48 LCHVFNTCIDSGIFPTVFKKALVHPIHKNG-DKMNITNYRPISVLSTLSKIFE 203
+C +FN G FP +KK+ + I K G DK ++YRPIS+L+ LSK+FE
Sbjct: 471 ICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTCLSKLFE 523
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GT + +TS I ++ AIFLD+++A D V + LL K+
Sbjct: 543 HQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKI 597
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 48 LCHVFNTCIDSGIFPTVFKKALVHPIHKNG-DKMNITNYRPISVLSTLSKIFE 203
L +FN+ +D G FP +K A + IHK G ++ +YRP S+L +L KI E
Sbjct: 477 LALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIME 529
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 263 QYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSK 421
Q+GFR GT + + + LE + NK + FLD+ +A D V P LL K
Sbjct: 550 QFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYK 602
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 48 LCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKM-NITNYRPISVLSTLSKIFE 203
+ ++ N C+ +G FP +K A + PI K G N +YRPIS+LS LSKI E
Sbjct: 500 IVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILE 552
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +2
Query: 263 QYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKLEVVG 436
QYGFR+G T L+L + I E + +K + LD+ A DTV LL KL+++G
Sbjct: 573 QYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIG 630
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 48 LCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKM-NITNYRPISVLSTLSKIFE 203
+ ++ N C+ +G FP +K A + PI K G N +YRPIS+LS LSKI E
Sbjct: 448 IVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILE 500
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +2
Query: 263 QYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKLEVVG 436
QYGFR+G T L+L + I E + +K + LD+ A DTV LL KL+++G
Sbjct: 521 QYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIG 578
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GTE +T ILE K A+FLD+S+A D V LL KL
Sbjct: 476 HQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 530
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNIT-NYRPISVLSTL 188
LIK L ++N+ + G +P +K A V I K G +N +YRPIS+LS L
Sbjct: 392 LIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGL 451
Query: 189 SKIFE 203
SK+FE
Sbjct: 452 SKMFE 456
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GTE +T ILE K A+FLD+S+A D V LL KL
Sbjct: 604 HQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 658
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNIT-NYRPISVLSTL 188
LIK L ++N+ + G +P +K A V I K G N +YRPIS+LS L
Sbjct: 520 LIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISLLSGL 579
Query: 189 SKIFE 203
SK+FE
Sbjct: 580 SKMFE 584
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GTE +T ILE K A+FLD+S+A D V LL KL
Sbjct: 592 HQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNIT-NYRPISVLSTL 188
LIK L ++N+ + G +P +K A V I K G +N +YRPIS+LS L
Sbjct: 508 LIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGL 567
Query: 189 SKIFE 203
SK+FE
Sbjct: 568 SKMFE 572
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 48 LCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNITNYRPISVLSTLSKIFE 203
+C +FN G FP +KK+++ I K +YRPIS+L+ LSK+FE
Sbjct: 13 ICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQPSYRPISLLTCLSKLFE 64
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNIT-NYRPISVLSTL 188
LIKA L ++N+ + G +P +K A V I K G +N +YRPIS+LS L
Sbjct: 508 LIKALPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGL 567
Query: 189 SKIFE 203
SK+FE
Sbjct: 568 SKMFE 572
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GTE +T ILE K A+FLD+S+A D V LL KL
Sbjct: 592 HQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GTE +T ILE K A+FLD+S+A D V LL KL
Sbjct: 554 HQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 608
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNIT-NYRPISVLSTL 188
LIK L ++N+ + G +P +K A V I K G +N +YRPIS+LS L
Sbjct: 470 LIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGL 529
Query: 189 SKIFE 203
SK+FE
Sbjct: 530 SKMFE 534
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR GTE +T ILE K A+FLD+S+A D V LL KL
Sbjct: 592 HQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNIT-NYRPISVLSTL 188
LIK L ++N+ + G +P +K A V I K G +N +YRPIS+LS L
Sbjct: 508 LIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGL 567
Query: 189 SKIFE 203
SK+FE
Sbjct: 568 SKMFE 572
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 48 LCHVFNTCIDSGIFPTVFKKALVHPIHK-NGDKMNITNYRPISVLSTLSKIFE 203
L +FN + +G +P ++ A++ PI K N +I +YRPIS+LS L K E
Sbjct: 475 LLDIFNQILTTGKYPHTWRSAIIIPISKPNKPPSDINSYRPISLLSCLGKTLE 527
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNIT-NYRPISVLSTL 188
LIK L ++N+ + G +P +K A V I K G N +YRPIS+LS L
Sbjct: 508 LIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISLLSGL 567
Query: 189 SKIFE 203
SKIFE
Sbjct: 568 SKIFE 572
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR G+E +T ILE K A+FLD+S+A D V LL KL
Sbjct: 592 HQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKL 646
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 9 ALIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGD-KMNITNYRPISVLST 185
A +KA + L ++N + FP +K A + IHK G + + +YRPIS+LS+
Sbjct: 463 ATLKALPVRAILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPESYRPISLLSS 522
Query: 186 LSKIFE 203
LSK++E
Sbjct: 523 LSKLWE 528
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKLE 427
+Q+GFR G T + LT IL+ ++K A+F+D+ +A D V L+SK++
Sbjct: 548 HQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVK 603
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHKNGD-KMNITNYRPISVLSTLSKIFE 203
VFN + FP +K ++ IHK G + +YRPIS+L ++SK+FE
Sbjct: 478 VFNAIVRLQYFPYQWKLGIISMIHKPGKPEREPASYRPISLLPSISKVFE 527
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 257 QNQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTV 397
++Q+GFR+G T + + IL ++K ++FLD+ +A D V
Sbjct: 546 EHQFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRV 592
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHKNGDK-MNITNYRPISVLSTLSKIFE 203
++N + +G FP +K A + I K G + +YRPIS+LS LSK+ E
Sbjct: 79 IYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLE 128
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR G E +T IL+ + K A FLD+++A D V LL KL
Sbjct: 148 HQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL 202
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHKNGDK-MNITNYRPISVLSTLSKIFE 203
++N + +G FP +K A + I K G + +YRPIS+LS LSK+ E
Sbjct: 526 IYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLE 575
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR G E +T IL+ + K A FLD+++A D V LL KL
Sbjct: 595 HQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL 649
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHKNGDK-MNITNYRPISVLSTLSKIFE 203
++N + +G FP +K A + I K G + +YRPIS+LS LSK+ E
Sbjct: 526 IYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLE 575
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR G E +T IL+ + K A FLD+++A D V LL KL
Sbjct: 595 HQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL 649
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHKNGDK-MNITNYRPISVLSTLSKIFE 203
++N + +G FP +K A + I K G + +YRPIS+LS LSK+ E
Sbjct: 526 IYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLE 575
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKL 424
+Q+GFR G E +T IL+ + K A FLD+++A D V LL KL
Sbjct: 595 HQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKL 649
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNI-TNYRPISVLSTL 188
++KAA V F C+ G+FP +KK + + K N+ +YRP+ +L +
Sbjct: 429 IVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVLLLKGKGPANVPRSYRPLCLLDIV 488
Query: 189 SKIFE 203
K+FE
Sbjct: 489 GKLFE 493
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Frame = +2
Query: 263 QYGFRSGRGTEDAALELTSTILEHLN-------NKAXTLAIFLDLSKAXDTVSVPILLSK 421
QYGFR G+ T DA +T + L+ +K I LD+ A +T PI+L
Sbjct: 514 QYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGA 573
Query: 422 LEVVGI 439
+ +G+
Sbjct: 574 MRNLGV 579
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHKNGDKMNI-TNYRPISVLSTLSKIFE 203
+FN G FP +K + I K G + ++YRPIS+LS +SK+FE
Sbjct: 476 LFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFE 525
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +2
Query: 260 NQYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKLEV 430
+Q+GFR GT + +T+ I + A+FLD+S+A D V + L+ K+++
Sbjct: 545 HQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKIKI 601
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 VFNTCIDSGIFPTVFKKALVHPIHK-NGDKMNITNYRPISVLSTLSKIFE 203
+FN +S I P +K +L+ PI K N DK ++YRPIS+ ++KI +
Sbjct: 474 LFNEIFNSHI-PQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILD 522
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 263 QYGFRSGRGTEDAALELTSTILEHLNNKAXTLAIFLDLSKAXDTVSVPILLSKLEVVGIR 442
Q+GFR GR EDA + S++ + L F+D A D V LS+L +G R
Sbjct: 544 QFGFRQGRCVEDAWRHVKSSV--GASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCR 601
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 12 LIKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHK--NGDKMNITNYRPISVLST 185
+ KA + L +F+ CI G FP +K V + K + DK ++YR I +L
Sbjct: 461 ICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPV 520
Query: 186 LSKIFE 203
K+ E
Sbjct: 521 FGKVLE 526
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,255,264
Number of Sequences: 53049
Number of extensions: 316907
Number of successful extensions: 571
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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