Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0518
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    39   0.002
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    39   0.002
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    39   0.002
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    38   0.005

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 60  FNTCIDSGIFPTVFKKALVHPIHKNGDKMNITNYRPISVLSTLSKIF 200
           FN  + S   P  +K +    I K GD+ N+ NYRPI +L  L K+F
Sbjct: 419 FNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVF 465


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 60  FNTCIDSGIFPTVFKKALVHPIHKNGDKMNITNYRPISVLSTLSKIF 200
           FN  + S   P  +K +    I K GD+ N+ NYRPI +L  L K+F
Sbjct: 590 FNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVF 636


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 60  FNTCIDSGIFPTVFKKALVHPIHKNGDKMNITNYRPISVLSTLSKIF 200
           FN  + S   P  +K +    I K GD+ N+ NYRPI +L  L K+F
Sbjct: 329 FNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVF 375


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +3

Query: 48  LCHVFNTCIDSGIFPTVFKKALVHPIHK-NGDKMNITNYRPISVLSTLSKIFE 203
           L +++N  + + I P  +KKA V  I K   D    ++YRPIS+LS ++K+ E
Sbjct: 367 LAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLE 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,509,237
Number of Sequences: 27780
Number of extensions: 169358
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)