Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0518
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.00 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 267 YWFWELCYTFSGNLAV 220
           +W W L Y F G++ +
Sbjct: 209 HWHWHLVYPFEGDIRI 224


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 15  IKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNITNYRPISVLSTLSK 194
           I A G+I  P +  VF   ++     TVF++ L+      G    +T   P    S L K
Sbjct: 634 IMALGMIGEPKILSVFEPYLEGKQQMTVFQRTLM-----VGSLGKLTETNPKLARSVLYK 688

Query: 195 IF 200
           I+
Sbjct: 689 IY 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,657
Number of Sequences: 438
Number of extensions: 2355
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)