Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0513
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   7.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   9.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    24   9.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    24   9.9  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 212 ICVEFEHGNYKSQFPFLCNYEVMQILQKLKD 304
           I V+ EH +Y+S   F+C   +MQI  + KD
Sbjct: 240 IAVDLEHHDYRSFRGFVC---LMQISNREKD 267


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 373 QDTECKNQSAQKIXKFLEAMKKYKLT 450
           ++T+C ++  QK+ ++LE + +  LT
Sbjct: 17  KNTKCPDKFEQKVEEYLEVLNELHLT 42


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 207 WCLTSLMYHWLLA*F*NISTKAVFDF 130
           W + ++ + WL + F N+S++A  DF
Sbjct: 372 WNIPTVHHSWLYSSFKNLSSQAFTDF 397


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 292 LENLHNFIITQKWELAFIVSMFKFNTYHL 206
           L+N H ++++  W  A+   + + + +HL
Sbjct: 424 LKNAHKYVLSDNWSHAYREEIVRQSLHHL 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,031
Number of Sequences: 5004
Number of extensions: 31408
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)