Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0513
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical p...    31   0.54 
Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical pr...    30   0.94 
AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK177.1 protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 218 VEFEHGNYKSQFPFLCNYEVMQILQKLKDNTHKK 319
           + FE    +   PF CN  VM + ++  D THKK
Sbjct: 65  ISFEKMGKREVRPFFCNDHVMNLRRRPGDETHKK 98


>Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical
           protein M106.7 protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 242 KSQFPFLCNYEVMQILQKLK--DNTHKKHKREASLATVTYET 361
           K++   L N EV+  L  LK  ++  ++H+R   L+TV YET
Sbjct: 5   KTRETMLTNQEVLSFLNALKKEEDNKQQHERCKQLSTVIYET 46


>AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical
           protein Y48A6B.1 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 325 LMLFMCVIF*LLENLHNFIITQKWELAFIVS 233
           L LF+C    LL +LH +++T+K    +I++
Sbjct: 37  LCLFVCFFGVLLNSLHFYVLTRKAMRVYIIN 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,044,864
Number of Sequences: 27780
Number of extensions: 169769
Number of successful extensions: 361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)