Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0513
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.17 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.17 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.70 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.7  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 188 IREVKHQVICVEFEHGNYKSQFPFLCNYEVMQILQKLKDNTHKKH 322
           I E + +V C   + GNY++    +CN    Q+ Q +    H  H
Sbjct: 210 ILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIPH 254


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 188 IREVKHQVICVEFEHGNYKSQFPFLCNYEVMQILQKLKDNTHKKH 322
           I E + +V C   + GNY++    +CN    Q+ Q +    H  H
Sbjct: 210 ILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIPH 254


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 400 HSDFCILCLVSNDSLICN 347
           HSD C LCL S +++I N
Sbjct: 351 HSDSCCLCLDSMNAVIRN 368


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 156 ISTKAVFDFNNMXXXXXXXXYWVKIVFL 73
           +ST  + ++++          WVK+VFL
Sbjct: 310 VSTILILNYHHRNADTHEMSEWVKVVFL 337


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 47  NPNF*QQWLKNTIFT 91
           NPN  +   KNTIFT
Sbjct: 78  NPNAMKTIFKNTIFT 92


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 147 SWIYFKIKPKA 179
           SWI F IKP+A
Sbjct: 231 SWIAFWIKPEA 241


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 147 SWIYFKIKPKAS 182
           SW+ F IKP+A+
Sbjct: 262 SWVSFWIKPEAA 273


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 351 VTVASEASLLCFLCVLSF 298
           + +A  A  +CFL VLS+
Sbjct: 270 IRIAKAAITICFLYVLSW 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,647
Number of Sequences: 438
Number of extensions: 2141
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)