Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0512
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    27   1.8  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    25   5.5  

>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 161 HSIILMLKLLRDARRPITVLPRLILYCVCVKYYNPK 268
           +++I +  L RD R  +   PR   YCVC  +  PK
Sbjct: 124 YNLIKLENLPRDKREELG-FPRATAYCVCEAFQLPK 158


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 13  EDDEKKPAENGDKNGEEPPS 72
           E++E +  E GD+  +EPPS
Sbjct: 218 EEEEDEEDEEGDEEKQEPPS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,607
Number of Sequences: 5004
Number of extensions: 19930
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)