Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0512
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             27   5.6  
SB_5927| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)            27   5.6  
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)                27   5.6  
SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)                 27   7.4  
SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)                   27   9.7  

>SB_57408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 248 VKYYNPKRPSVRPALSLPYIYS*INKHHYFILSINYFSR 364
           VKYY PKR S  P+ S P  +S       F + + +F R
Sbjct: 25  VKYYTPKRTSTPPS-SFPTAHSSTESFSVFFVYMVFFIR 62


>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 264

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 151 QTTAFDYFNVEAAAGRAASYHCVASSYII 237
           QT++ D     ++ G+  +Y+CV+S+YII
Sbjct: 209 QTSSLDRTEDRSSDGQMDTYNCVSSAYII 237


>SB_5927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 173 LMLKLLRDARRPITVLPRLILYCVCVKYYNPK 268
           L+ K +++ + P T+ P  +LY    +Y NP+
Sbjct: 38  LLRKAVKNPKAPSTIFPANMLYNTLARYSNPR 69


>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
          Length = 820

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 151 QTTAFDYFNVEAAAGRAASYHCVASSYII 237
           QT++ D     ++ G+  +Y+CV+S+YII
Sbjct: 35  QTSSLDRTEDRSSDGQMDTYNCVSSAYII 63


>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
          Length = 713

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 7   AREDDEKKPAEN--GDKNGEEPPSNGN 81
           AR++   KP+E+  G K+  +PPSNG+
Sbjct: 409 ARQEPTNKPSEDKPGGKDKSKPPSNGS 435


>SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 151 QTTAFDYFNVEAAAGRAASYHCVASSYII 237
           QT++ D     ++ G+  +Y+CV+S+YII
Sbjct: 136 QTSSLDRTEDRSSDGQMDTYNCVSSAYII 164


>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
          Length = 1318

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 46   PRFRLAFSHRPLVP 5
            PRFR+A +H+PL+P
Sbjct: 1133 PRFRIATAHKPLLP 1146


>SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 7   AREDDEKKPAENGDKNGEEPPSN 75
           AR ++E++  EN +++GEE PS+
Sbjct: 75  ARREEEEEGRENTEEDGEERPSD 97


>SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)
          Length = 791

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 13  EDDEKKPAENGDKNGEEPPSN 75
           +DD++  A++GD+N  EP S+
Sbjct: 490 DDDDENDADDGDENDAEPSSD 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,924,362
Number of Sequences: 59808
Number of extensions: 158075
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)