Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0512
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 209 ITVLPRLILYCVCVKYYNPKR--PSVRPALSLPYIYS*INKHHYFILSINYFS 361
           I +LP + +YCV V   N       VR  LS         ++ Y  L ++Y S
Sbjct: 785 IPILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPPQQNPYMFLPVSYMS 837


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 222 GNTV--IGRRASRSSFNIKIIECGGLYASLLPANDS 121
           G T+  IGR+    S NIKII      + L P++DS
Sbjct: 217 GGTISGIGRKLKELSPNIKIIAVDPKGSILDPSSDS 252


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 52  SCPRFRLAFSHRPLVP 5
           SCP   + F+H P  P
Sbjct: 190 SCPEISVNFAHFPATP 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,592
Number of Sequences: 438
Number of extensions: 1444
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)