Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0512
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    27   4.5  
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ...    27   7.9  

>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 295 RESRSHRRSLRVVILNTNTI*YKTRQHSDRTPRVPQQLQH 176
           R S    RS+    L +N +  + R HS R    PQ+L H
Sbjct: 77  RVSNQDPRSINYPSLTSNPLPPRKRSHSGRVLNPPQELSH 116


>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
           subunit HAP3-related contains Pfam PF00808 :
           Histone-like transcription factor (CBF/NF-Y) and
           archaeal histone; similar to polymerase epsilon p17
           subunit (DNA polymerase epsilon subunit 3) (YB-like
           protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7)  [Mus
           musculus];
          Length = 275

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1   NSAREDDEKKPAENG-DKNGEEPPSNGNSD 87
           N   E++EK+  EN  ++NG E   +GN D
Sbjct: 211 NGNDEENEKEDEENSMEENGNESEESGNED 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,713,439
Number of Sequences: 28952
Number of extensions: 103194
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)