Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0507
         (435 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   2.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   5.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   5.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.7  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 343 HDLKNLIIQGRAEEEINDLE 284
           +D K+   QG+A+ EI DLE
Sbjct: 30  YDSKSHFRQGQAKFEITDLE 49


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 249 ESFTCXLYQSKN 284
           E F+C  YQ KN
Sbjct: 229 EGFSCQYYQGKN 240


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 249 ESFTCXLYQSKN 284
           E F+C  YQ KN
Sbjct: 249 EGFSCQYYQGKN 260


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 233 KNRQTRELYLXSLPIKE 283
           + RQTRE    SLP+++
Sbjct: 587 RRRQTREKRKKSLPVRK 603


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,931
Number of Sequences: 336
Number of extensions: 1082
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)