Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0507
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    81   7e-17
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   1.2  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   6.7  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   6.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   6.7  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    24   8.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 81.0 bits (191), Expect = 7e-17
 Identities = 38/58 (65%), Positives = 47/58 (81%)
 Frame = +2

Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
           K +   E+YL SLPIKE++I+D+FL P LNDEV+K++PVQKQTRA Q TRFKAFV  G
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIG 104



 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +3

Query: 174 KEDQKEWXPVTKLGRLVREGKIDKLE 251
           ++++KEW PVTKLGRLV+ GKI  +E
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIE 53


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 282 NSRSLISSSARP*MMRFLRSCLYRNKHVPXSAHVSRH 392
           +SR+ I S+     +++L S   R KH+P    ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 114 YLHRVIRIRRENR----HVHRLEQRPPFTNELKKL 22
           Y+HR+ R  R  +    ++  LEQ  PF N +K L
Sbjct: 377 YIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHL 411


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 212 RPSCSRRKNRQTRELYLXSLPIKEFEIIDFFLGPSLNDE 328
           R    +++NR+T +  L    +      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 279 KNSRSLISSSARP*MMRFLRSCLYRNK 359
           K SR+    S  P MMRF+  C++  K
Sbjct: 38  KRSRNAQGFSLEPIMMRFIELCVHLRK 64


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 358 LFLYRHDLKNLIIQGRAEEEINDLE 284
           L +Y   L+NL+ QG+A E +N ++
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIK 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,275
Number of Sequences: 5004
Number of extensions: 19601
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)