Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0507
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 69 2e-12
03_06_0386 + 33555682-33556344,33557138-33557299 68 3e-12
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 29 2.2
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 27 6.6
11_06_0217 - 21353558-21353660,21354680-21355510,21356340-213564... 27 8.7
06_01_1118 - 9213785-9215051,9215811-9215992,9216075-9216611,921... 27 8.7
06_01_1080 + 8836289-8836347,8836525-8836783,8836911-8837444,883... 27 8.7
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 27 8.7
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 27 8.7
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 68.5 bits (160), Expect = 2e-12
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = +2
Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
K + E+YL SLP+KE +I++ + P L DEV+KI PVQKQTRA Q TRFKAFV G
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVG 117
Score = 40.7 bits (91), Expect = 5e-04
Identities = 15/26 (57%), Positives = 23/26 (88%)
Frame = +3
Query: 174 KEDQKEWXPVTKLGRLVREGKIDKLE 251
++++++W PVTKLGRLV+E KI K+E
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIE 66
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 68.1 bits (159), Expect = 3e-12
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +2
Query: 251 ELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
E+YL SLP+KE +I++ + P L DEV+KI PVQKQTRA Q TRFKAFV G
Sbjct: 64 EIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVG 114
Score = 40.7 bits (91), Expect = 5e-04
Identities = 14/26 (53%), Positives = 23/26 (88%)
Frame = +3
Query: 174 KEDQKEWXPVTKLGRLVREGKIDKLE 251
++++++W PVTKLGRLV+EG+ K+E
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIE 63
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 219 LVREGKIDKLESFTCXLYQSKNSRSLISS 305
LV +DK+ F C L++S S+SL++S
Sbjct: 244 LVYSKHVDKVYCFCCKLFKSNQSKSLLAS 272
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 111 LHRVIRIRRENRHVHRLEQRPPFTNELKKLCHHSCRI 1
+HR++ +++ N + E+R NE++ LC C I
Sbjct: 158 VHRILALKKIN--IFEKEKRQQILNEMRTLCEACCYI 192
>11_06_0217 -
21353558-21353660,21354680-21355510,21356340-21356464,
21356546-21357076,21357207-21357650,21358469-21358612
Length = 725
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 176 GRPERVGSCHQTRPSCSRRKNRQTRELYLXSLPIKEFE 289
G + G+C +TRP K Q EL +L ++EFE
Sbjct: 341 GEWNKDGNCVRTRPYRRGEKTLQGVELDFHTLQVEEFE 378
>06_01_1118 -
9213785-9215051,9215811-9215992,9216075-9216611,
9216742-9217224
Length = 822
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 176 GRPERVGSCHQTRPSCSRRKNRQTRELYLXSLPIKEFE 289
G + G+C +TRP K Q EL +L ++EFE
Sbjct: 308 GEWNKDGNCVRTRPYRRGEKTLQGVELDFHTLQVEEFE 345
>06_01_1080 +
8836289-8836347,8836525-8836783,8836911-8837444,
8837527-8837636,8843938-8844129,8845062-8845203
Length = 431
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 176 GRPERVGSCHQTRPSCSRRKNRQTRELYLXSLPIKEFE 289
G + G+C +TRP K Q EL +L ++EFE
Sbjct: 252 GEWNKDGNCVRTRPYRRGEKTLQGFELDFHTLQVEEFE 289
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 208 NSAVLFAKEKSTNSRALLVXFTNQR 282
N A +FA + +TN+ AL+ FT+ R
Sbjct: 346 NLASMFAVQNATNTSALIAIFTSMR 370
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 267 LYQSKNSRSLISSSARP*MMRFLRSCLYRNKHVPXSAHVSRHLL 398
+YQS +R + S +P L CL + ++ +AHV R +L
Sbjct: 400 VYQSMRTRGI---STKPTTFHLLVECLSKKNNLEKAAHVVRDML 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,775,156
Number of Sequences: 37544
Number of extensions: 128522
Number of successful extensions: 324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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