Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0507
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               87   4e-18
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       28   3.8  
SB_36133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 87.4 bits (207), Expect = 4e-18
 Identities = 43/58 (74%), Positives = 46/58 (79%)
 Frame = +2

Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
           K +    +YL SLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRA Q TRFKAFV  G
Sbjct: 22  KIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIG 79



 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 192 WXPVTKLGRLVREGKIDKLE 251
           W PVTKLGRLV++ KI  LE
Sbjct: 8   WVPVTKLGRLVKDLKIKTLE 27


>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 375 HCXARVCFCTGMILRTSSFRDGPRKKSMISNSLIGKXNK*SSRVC 241
           H     C      L+T   R   R+KSM S + + K ++ S+RVC
Sbjct: 203 HAQLAACAVVRSSLKTIDIRRVRRQKSMRSCAKVAKDDRFSTRVC 247


>SB_36133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 188 RVGSCHQTRPSCSRRKNRQTRELYLXSLP 274
           RV S H  +P   +R+N Q+R     SLP
Sbjct: 70  RVHSLHDAKPVTMKRRNSQSRSRKTRSLP 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,245,722
Number of Sequences: 59808
Number of extensions: 153841
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)