Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0507
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    71   5e-13
Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AL110477-19|CAJ43447.1|  327|Caenorhabditis elegans Hypothetical...    28   2.5  
AL110477-18|CAB54327.1|  312|Caenorhabditis elegans Hypothetical...    28   2.5  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 70.5 bits (165), Expect = 5e-13
 Identities = 39/59 (66%), Positives = 42/59 (71%)
 Frame = +2

Query: 230 RKNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
           +K     E+YL SLPIKEFEIID  L  +L DEVLKI PVQKQT A Q TRFKAFV  G
Sbjct: 70  KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIG 127



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +3

Query: 177 EDQKEWXPVTKLGRLVREGKIDKLE 251
           E + EW PVTKLGRLV+E KI  LE
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLE 76


>Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical
           protein M05D6.7 protein.
          Length = 409

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 207 KLGRLVREGKIDKLESFTCXLYQSKNSRSL 296
           K+G ++REGK++K  S    +Y+  NS+SL
Sbjct: 107 KIGNIIREGKVEKNVSNDNKIYELWNSKSL 136


>AL110477-19|CAJ43447.1|  327|Caenorhabditis elegans Hypothetical
           protein Y113G7B.5b protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 334 KNLIIQGRAEEEINDLEFFDW*RXQVKLSSLSIFPSRTRRPSLVTGXH 191
           K++ I+GR  E+I    FF + R  +KL  LS+  +   R  L+   H
Sbjct: 213 KSINIEGRVCEDIPIEHFFHFSRITIKLRKLSVSDAIKIRDDLMKSAH 260


>AL110477-18|CAB54327.1|  312|Caenorhabditis elegans Hypothetical
           protein Y113G7B.5a protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 334 KNLIIQGRAEEEINDLEFFDW*RXQVKLSSLSIFPSRTRRPSLVTGXH 191
           K++ I+GR  E+I    FF + R  +KL  LS+  +   R  L+   H
Sbjct: 213 KSINIEGRVCEDIPIEHFFHFSRITIKLRKLSVSDAIKIRDDLMKSAH 260


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 397 NKCLETCALXGTCLFLYR-HDLKNLIIQGR 311
           ++CLE C +   C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 397 NKCLETCALXGTCLFLYR-HDLKNLIIQGR 311
           ++CLE C +   C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,528,614
Number of Sequences: 27780
Number of extensions: 113804
Number of successful extensions: 312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)