Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0507
(435 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 84 4e-17
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 82 1e-16
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 81 3e-16
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 81 3e-16
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 81 3e-16
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 81 3e-16
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 26 9.5
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 83.8 bits (198), Expect = 4e-17
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = +2
Query: 239 RQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
+Q ++YL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA Q TRFKAFV G
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 125
Score = 33.9 bits (74), Expect = 0.048
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 180 DQKEWXPVTKLGRLVREGKIDKLE 251
++++W PVTKLGRLV G I ++E
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIE 73
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 82.2 bits (194), Expect = 1e-16
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +2
Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
K + ++YL SLP+KE++IID +GPSL DEV+KIMPVQKQTRA Q TRFKAF+ G
Sbjct: 59 KITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVG 116
Score = 41.5 bits (93), Expect = 2e-04
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +3
Query: 180 DQKEWXPVTKLGRLVREGKIDKLE 251
++++W PVTKLGRLV+EGKI K+E
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIE 64
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 81.0 bits (191), Expect = 3e-16
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +2
Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
K + ++YL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA Q TRFKAFV G
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 180 DQKEWXPVTKLGRLVREGKIDKLE 251
++ +W PVTKLGRLV + KI KLE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLE 72
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 81.0 bits (191), Expect = 3e-16
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +2
Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
K + ++YL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA Q TRFKAFV G
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 180 DQKEWXPVTKLGRLVREGKIDKLE 251
++ +W PVTKLGRLV + KI KLE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLE 72
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 81.0 bits (191), Expect = 3e-16
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +2
Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
K + ++YL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA Q TRFKAFV G
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 180 DQKEWXPVTKLGRLVREGKIDKLE 251
++ +W PVTKLGRLV + KI KLE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLE 72
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 81.0 bits (191), Expect = 3e-16
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +2
Query: 233 KNRQTRELYLXSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAXQCTRFKAFVXXG 406
K + ++YL SLP+KE++IID +GP+L DEV+KIMPVQKQTRA Q TRFKAFV G
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 180 DQKEWXPVTKLGRLVREGKIDKLE 251
++ +W PVTKLGRLV + KI KLE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLE 72
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 111 LHRVIRIRRENRHVHRLEQRPPFTNELKKLCHHSCR 4
L RVIRI +RH HR+ P F E++ C CR
Sbjct: 590 LPRVIRI---SRHFHRIHFTPSFDQEVR--CCGVCR 620
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,023,124
Number of Sequences: 28952
Number of extensions: 105123
Number of successful extensions: 269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -