Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0506
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   2.5  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   5.8  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   5.8  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   7.6  

>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 208 CFLREFSLLISGFFYDIK 155
           C+++ FSLLIS FF  I+
Sbjct: 118 CYIQSFSLLISNFFIAIE 135


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 344 LAYLHKKREVEFIDGNLCLSTTILKCRFFAYLL 246
           + Y+H +R  E  DGN+C    +    F ++ +
Sbjct: 396 IIYVHYRRRYEMRDGNICPEDRLFPLFFGSFFI 428


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 190 SLLISGFFYDIKQETFNVF 134
           SL+I   FYD+K  T +VF
Sbjct: 552 SLIIGSIFYDMKLNTVDVF 570


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 289 CRRPY*NVAFSHIYYKHIKHRNVSR-LLCFLREF-SLLISGFFY 164
           C+R   N   S++YY +  H+  SR L  FL E  SLLI G +Y
Sbjct: 328 CKRNK-NPPLSYVYYDY--HKQGSRNLPLFLAEIQSLLIEGKYY 368


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 371 INVYKNYETLAYLHKKREVEFIDGNLCLSTTI 276
           INVY + E L   H+K   +  D  LCL  TI
Sbjct: 143 INVYFDEEWLNGFHEKVIQKTYDHKLCLRKTI 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,725
Number of Sequences: 5004
Number of extensions: 35719
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)