Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0506
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AC024775-8|AAK68458.1|  347|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.10 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 371 INVYKNYETLAYLHKKREVEFIDGNLCLSTTILKCRFFAYLL*TYQTP 228
           I +Y  YE +  +H++R  +F    L LS   +     AYL   Y  P
Sbjct: 107 ITMYVKYEAVRSIHRERSAKFSVIILSLSPLFITMSAEAYLTIEYHLP 154


>AC024775-8|AAK68458.1|  347|Caenorhabditis elegans Hypothetical
           protein Y41D4A.8 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 371 INVYKNYETLAYLHKKREVEFIDGNLCLSTTILKCRFF 258
           I V   Y+++ +L KKR   FI G L  S      RFF
Sbjct: 169 IGVCHPYKSVEWLPKKRVTTFIIGLLTFSVIFNTTRFF 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,137,242
Number of Sequences: 27780
Number of extensions: 197269
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)