Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0506
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 271 FNMVVDKHKFPSINSTS 321
           FN VV +   PS+NST+
Sbjct: 612 FNCVVVEETIPSLNSTN 628


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 293 CLSTTILKCRFFAYLL*TYQTP*CIKIVV 207
           CL   +L  R F+Y L     P C+ ++V
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPCCMLVIV 258


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 293 CLSTTILKCRFFAYLL*TYQTP*CIKIVV 207
           CL   +L  R F+Y L     P C+ ++V
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPCCMLVIV 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,785
Number of Sequences: 438
Number of extensions: 2481
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)