Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0506
(467 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21560.1 68415.m02566 expressed protein contains weak similar... 29 1.6
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote... 28 3.6
At4g01290.1 68417.m00170 expressed protein 27 4.8
At2g13630.1 68415.m01502 F-box family protein-related contains T... 27 4.8
At4g03490.1 68417.m00476 ankyrin repeat family protein contains ... 27 8.4
At3g57470.1 68416.m06398 peptidase M16 family protein / insulina... 27 8.4
At3g09560.2 68416.m01136 lipin family protein contains Pfam prof... 27 8.4
At3g09560.1 68416.m01135 lipin family protein contains Pfam prof... 27 8.4
>At2g21560.1 68415.m02566 expressed protein contains weak similarity
to reticulocyte-binding protein 2 homolog A [Plasmodium
falciparum] gi|9754767|gb|AAF98066
Length = 274
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 410 IILTQXRLMCXCIINVYKNYETLAYLHKKREVEFIDGNLCLSTTILKCRFFA 255
+I+T +L +I V + LA R + F+ GN + T ++KC FFA
Sbjct: 39 VIITLAKLCYQLVITVESS--GLASFLINRHLAFVLGNTIVITIVVKCGFFA 88
>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
kinase, putative identical to putative kinase-like
protein TMKL1 precursor GB:P33543 from [Arabidopsis
thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
Length = 674
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 344 LAYLHKKREVEFIDGNLCLSTTILKCRFFAYL 249
LAYLH +EV I GN+ ++ FFA L
Sbjct: 485 LAYLHTGQEVPIIHGNIRSKNVLVDDFFFARL 516
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +3
Query: 129 NRKTLNVSCLMS*KKPEIKRENSLRKHNNLDTLRXXXXXXXXXEKATFQYGRRQA 293
N + +N+S L+ + ++ S K +++ T EKAT G++++
Sbjct: 378 NERAVNISSLLGISTDTVNKDKSFEKLSSISTPTEIQGYPIKSEKATMTLGKKKS 432
>At2g13630.1 68415.m01502 F-box family protein-related contains
TIGRFAM TIGR01640 : F-box protein interaction domain;
similar to F-box protein Fbx8 (GI:6164735) [Homo
sapiens]
Length = 297
Score = 27.5 bits (58), Expect = 4.8
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -2
Query: 262 FSHIYYKHIKHRNVSRLLCFLREFSLLISGFFYDIKQETFNVFRL--NHDDQRSTK*AAF 89
++H +Y + + ++ +L F+ S +D++ E FNV +L NH Q K
Sbjct: 126 YTHRHYPRSQGICWNGVVYYLASFNDKRSLMSFDLRSEDFNVIKLLKNHKLQEYGKLVDH 185
Query: 88 *TNH*TDIKHASCILLFLW 32
T T + HAS LL LW
Sbjct: 186 -TGKITIMCHASNGLLDLW 203
>At4g03490.1 68417.m00476 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 587
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 265 AFSHIYYKHIKHRNVSRLLCFLREFSLLISGFFYDIKQETFN 140
+ S+ KH+ NV L +SL+ SG YD ++T++
Sbjct: 544 SLSYYLLKHVAPINVLLHLKLWNHYSLVFSGHLYDGPKKTYS 585
>At3g57470.1 68416.m06398 peptidase M16 family protein / insulinase
family protein contains weak similarity to Pfam domain,
PF05193: Peptidase M16 inactive domain
Length = 776
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 233 FDMFIVNMRKSDISIWSSTSTNFHQ*IQPHVFYEDMLRFRNFY 361
+ +I S + SS TN+H I FYE + RF F+
Sbjct: 15 YSKYITEHGGSTNAYTSSEDTNYHFDINTDSFYEALDRFAQFF 57
>At3g09560.2 68416.m01136 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 904
Score = 26.6 bits (56), Expect = 8.4
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = -3
Query: 237 SNTVMYQDCCVS*ENFLF*SLVSFMTLNKKHSTSSD*TMTISVPPSEQLSRLIIRQTSNM 58
SN+ +D V E L S + T +H + + +VP +EQ++ L ++ NM
Sbjct: 616 SNSSSEEDLFVDSEPGLQNSPETQSTTESRHESPRRQLVRTNVPTNEQIASLNLKDGQNM 675
Query: 57 PPVFFCFSGNIL*T 16
+ F FS +L T
Sbjct: 676 --ITFSFSTRVLGT 687
>At3g09560.1 68416.m01135 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 904
Score = 26.6 bits (56), Expect = 8.4
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = -3
Query: 237 SNTVMYQDCCVS*ENFLF*SLVSFMTLNKKHSTSSD*TMTISVPPSEQLSRLIIRQTSNM 58
SN+ +D V E L S + T +H + + +VP +EQ++ L ++ NM
Sbjct: 616 SNSSSEEDLFVDSEPGLQNSPETQSTTESRHESPRRQLVRTNVPTNEQIASLNLKDGQNM 675
Query: 57 PPVFFCFSGNIL*T 16
+ F FS +L T
Sbjct: 676 --ITFSFSTRVLGT 687
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,190,388
Number of Sequences: 28952
Number of extensions: 169749
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -