Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0505
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_12272| Best HMM Match : ComC (HMM E-Value=1.7)                      27   6.0  
SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 27   7.9  

>SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
 Frame = +2

Query: 5   RXEKTFIVFVVCVVLAQALTDXQKENLKKHRADCLSETKADEQLVNKLKTGXFKTENE-- 178
           R  + F    V   ++Q+++    +++ +  +  L+     E + N+LK G    +    
Sbjct: 188 RYTRLFNQLSVSQSVSQSVSQSVSQSVSQSVSQSLTLIPVSEDVRNRLKPGDSTNDTTNG 247

Query: 179 ---PLKKYALCMLIKSQLMTKDGKFTKDLALAKVPNAEDKLXVEEAD*RFAWPTKAXALT 349
              P    A        +M+ + + +  +  ++ P A+D     +A   F WP++   L 
Sbjct: 248 SIAPSTSDANINNTSGSIMSIESRVSIVITPSESPRADDVSANRQA---FVWPSECQHLL 304

Query: 350 KQPGIM*NATTRKTXSTALFL 412
             PGI+ +  T+    T L +
Sbjct: 305 LDPGIVNDKQTQALLLTTLVM 325


>SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -2

Query: 195 AYFFNGSFSVLKXPVFSLFTNCSSAFVSERQSALCFFKFSFXSSVRA*AKTTQTTNTIKV 16
           +YFF  + SV +    SL    +    + R   + FF + F +S+     T +    IKV
Sbjct: 305 SYFFLVTISVERYQAISLHLRYNQVVTTRRTMLIAFFVWIFATSMVIFRFTLELKIVIKV 364

Query: 15  FSXRI 1
           +S  I
Sbjct: 365 YSLLI 369


>SB_12272| Best HMM Match : ComC (HMM E-Value=1.7)
          Length = 267

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +2

Query: 2   IRXEKTFIV----FVVCVVLAQALTDXQKENL--KKHRADCLSETKADEQLVNK 145
           IR EK  ++    FVV  + A  + + QK+    KKHR  C  +TK  +  + +
Sbjct: 35  IRGEKVRVLSWNAFVVVGIRAGFVNNCQKDGFAGKKHRDSCYCQTKTQKHFIQQ 88


>SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 148 QFVHQLFISFRLGETVGSVFLQVLL-LXICEGLSQDNADDEHDKSLLVPN 2
           +F+   F SFR+     S  L VL  L  CE +S  ++  E   SLL PN
Sbjct: 443 EFLAVSFSSFRVSPGTFSGALSVLFFLTRCEAVSSSDSGLERVVSLLFPN 492


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 133 LFISFRLG--ETVGSVFLQVLLLXICEGLSQDNADDEHDK 20
           LF++F  G  E VG  F+      +CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCT-LCEIAEDDENDDDHER 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,933,501
Number of Sequences: 59808
Number of extensions: 170563
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)