Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0505
(478 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 31 0.32
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 0.32
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 0.32
U39647-1|AAA80375.2| 351|Caenorhabditis elegans Hypothetical pr... 28 3.0
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 28 3.0
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 27 5.3
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 27 5.3
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 27 5.3
AL023835-5|CAA19490.1| 471|Caenorhabditis elegans Hypothetical ... 27 5.3
AY551963-1|AAS65427.1| 458|Caenorhabditis elegans histone acety... 27 9.2
AF106581-4|AAC78211.1| 458|Caenorhabditis elegans Myst family h... 27 9.2
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 31.5 bits (68), Expect = 0.32
Identities = 27/87 (31%), Positives = 40/87 (45%)
Frame = +2
Query: 50 AQALTDXQKENLKKHRADCLSETKADEQLVNKLKTGXFKTENEPLKKYALCMLIKSQLMT 229
A A +K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 230 KDGKFTKDLALAKVPNAEDKLXVEEAD 310
KD K K A AK+ +D EAD
Sbjct: 7325 KDDKL-KQEADAKLKKEKDDKLKHEAD 7350
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 31.5 bits (68), Expect = 0.32
Identities = 27/87 (31%), Positives = 40/87 (45%)
Frame = +2
Query: 50 AQALTDXQKENLKKHRADCLSETKADEQLVNKLKTGXFKTENEPLKKYALCMLIKSQLMT 229
A A +K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 230 KDGKFTKDLALAKVPNAEDKLXVEEAD 310
KD K K A AK+ +D EAD
Sbjct: 7345 KDDKL-KQEADAKLKKEKDDKLKHEAD 7370
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 31.5 bits (68), Expect = 0.32
Identities = 27/87 (31%), Positives = 40/87 (45%)
Frame = +2
Query: 50 AQALTDXQKENLKKHRADCLSETKADEQLVNKLKTGXFKTENEPLKKYALCMLIKSQLMT 229
A A +K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 230 KDGKFTKDLALAKVPNAEDKLXVEEAD 310
KD K K A AK+ +D EAD
Sbjct: 7345 KDDKL-KQEADAKLKKEKDDKLKHEAD 7370
>U39647-1|AAA80375.2| 351|Caenorhabditis elegans Hypothetical
protein C44E12.1 protein.
Length = 351
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 343 PHQTAWNYVKCYHXKDPKHXSFLXNTXSNXTXPY 444
P+ +N + DPKH L NT + PY
Sbjct: 50 PNSDRYNIYATFRNSDPKHVKVLLNTHLDTVPPY 83
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 35 VCVVLAQALTDXQKENLKKHRADCLSETKA--DEQLVNKLKTGXFKTENE 178
V + LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 101 DCLSETKADEQLVNKLKTGXFKTENEPLK 187
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 219 CDLISIHRAYFFNGSFSVLKXPVFSLFTNCSSAFVSERQSALCFFKFS 76
C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 16 CSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 101 DCLSETKADEQLVNKLKTGXFKTENEPLK 187
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AL023835-5|CAA19490.1| 471|Caenorhabditis elegans Hypothetical
protein Y37A1B.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 334 GXSPHQTAWNYVKCYHXKDPKHXSFLXNTXSNXTXPYLISV-NSSDVYI 477
G H T WN H K + S L N Y+I+V N +Y+
Sbjct: 69 GDEVHHTGWNACSSCHDKPTEKRSHLIVPCLNSDRIYIINVENERKIYL 117
>AY551963-1|AAS65427.1| 458|Caenorhabditis elegans histone
acetyltransferase protein.
Length = 458
Score = 26.6 bits (56), Expect = 9.2
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +2
Query: 74 KENLKKHRADCLSETKADEQLVNKLKTGXFKTENEPLKKYA--LCMLIKSQLMTKDGKFT 247
K LK+H C Q+ + K F+ + K YA LC+L K L K +
Sbjct: 214 KTCLKRHMEKCAMCHPPGNQIYSHDKLSFFEIDGRKNKSYAQNLCLLAKLFLDHKTLYYD 273
Query: 248 KDLALAKVPNAEDK 289
D L V ED+
Sbjct: 274 TDPFLFYVLTEEDE 287
>AF106581-4|AAC78211.1| 458|Caenorhabditis elegans Myst family
histone acetyltransferase-like protein 1 protein.
Length = 458
Score = 26.6 bits (56), Expect = 9.2
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +2
Query: 74 KENLKKHRADCLSETKADEQLVNKLKTGXFKTENEPLKKYA--LCMLIKSQLMTKDGKFT 247
K LK+H C Q+ + K F+ + K YA LC+L K L K +
Sbjct: 214 KTCLKRHMEKCAMCHPPGNQIYSHDKLSFFEIDGRKNKSYAQNLCLLAKLFLDHKTLYYD 273
Query: 248 KDLALAKVPNAEDK 289
D L V ED+
Sbjct: 274 TDPFLFYVLTEEDE 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,122,547
Number of Sequences: 27780
Number of extensions: 129522
Number of successful extensions: 307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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