Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0501
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   3.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   5.9  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   7.8  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 114 CFFKNCWKDTGINTSVENMTKHRSEN 37
           CF + CW  T  NT V++ +K+ + N
Sbjct: 589 CFSQYCWNGTVDNTPVDDDSKNPTYN 614


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 171 GPIICNIHLITILVYGVH*CFFKNCWKDTGINTSVEN---MTKHRSEN 37
           G I  ++ ++   +  +  CF   CW   G N+SV +   ++K++ EN
Sbjct: 763 GTIKASLEVLVKCIAPIIPCFSSECWLLLGHNSSVYSNWPISKNKKEN 810


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 331 NIVEXXXXXXXXVPLPDLKPYWFWAICYTFSGNLA 227
           N +E        +  PD   Y  WAIC+T++   A
Sbjct: 553 NTIENALEYVVKMQRPDGSWYGSWAICFTYAAMFA 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,324
Number of Sequences: 5004
Number of extensions: 32916
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)