Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0501
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    36   0.017
07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491...    29   2.0  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   2.0  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 255 IAQNQYGFRSGRGTEDAALELTSTILEHLNNKAKTLAIFLDLSKAFDTVSVPILLSKLEV 434
           ++ N YGF  G+  +D        I +   +K + + + LD  KAFDT+    +LS ++ 
Sbjct: 417 VSDNHYGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQH 476

Query: 435 VG 440
           +G
Sbjct: 477 MG 478


>07_01_0657 -
           4915264-4915386,4915586-4915714,4917773-4917859,
           4918220-4918368,4918498-4918555,4918632-4920614,
           4922064-4922123
          Length = 862

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 31  GLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMN 153
           G ++ P  C V + C+  G+F  +    L+H +++  D +N
Sbjct: 123 GYVITPCSCPVGSDCVCDGLFNLLEDNHLIHNVNQAPDVVN 163


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +3

Query: 255  IAQNQYGFRSGRGTEDAAL---ELTSTILEHLNNKAKTLAIFLDLSKAFDTVSVPILLSK 425
            +++ Q  F  GR   D AL   E   +I ++    +   A  LDLSKA+D V    L   
Sbjct: 996  VSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELA 1055

Query: 426  LEVVGIRGHLLKIFQSYL 479
            L  +G      K+ Q+ L
Sbjct: 1056 LNKLGFAHRWEKVAQNSL 1073


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,242,416
Number of Sequences: 37544
Number of extensions: 192537
Number of successful extensions: 334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)