Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0501
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 271 YWFWAICYTFSGNLAV 224
           +W W + Y F G++ +
Sbjct: 209 HWHWHLVYPFEGDIRI 224


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 23/93 (24%), Positives = 37/93 (39%)
 Frame = +1

Query: 19  IKAAGLILAPVLCHVFNTCIDSGIFPTVFKKALVHPIHKNGDKMNITNYRPISVLSTLSK 198
           I A G+I  P +  VF   ++     TVF++ L+      G    +T   P    S L K
Sbjct: 634 IMALGMIGEPKILSVFEPYLEGKQQMTVFQRTLM-----VGSLGKLTETNPKLARSVLYK 688

Query: 199 IFEXXXXXXXXXXXXXXXILPKTNTVLDLVEAL 297
           I+                +L KTN  L +++ +
Sbjct: 689 IY-LNTMESHEVRCTAVFLLMKTNPPLSMLQRM 720


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,356
Number of Sequences: 438
Number of extensions: 2382
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)