Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0501
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77210.1 68414.m08993 sugar transporter, putative similar to ...    28   3.7  
At1g30240.1 68414.m03699 PELP1-related contains weak similarity ...    27   5.0  

>At1g77210.1 68414.m08993 sugar transporter, putative similar to
           monosaccharide transporter PaMst-1 [Picea abies]
           GI:2258137, sugar carrier protein GI:169735 from
           [Ricinus communis], glucose transporter [Saccharum
           hybrid cultivar H65-7052] GI:347855; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 504

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 366 IFLDLSKAFDTVSVPILLSKLEVVGIRGHLLKIFQ 470
           IFL +   F   +VP+ LS++    IRG + ++FQ
Sbjct: 144 IFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQ 178


>At1g30240.1 68414.m03699 PELP1-related contains weak similarity to
           PELP1 [Homo sapiens] gi|21426922|gb|AAC17708
          Length = 873

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 315 LTSTILEHLNNKAKTLAIFLDLSKAFDTVSVPILLSK 425
           L + + E++ N+ + L  FL LSK   T+S   LLS+
Sbjct: 20  LRNLLSEYVPNEKQPLTNFLSLSKVVSTISTHKLLSE 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,294,875
Number of Sequences: 28952
Number of extensions: 164222
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)