Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0499
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    42   2e-04
02_04_0592 - 24171698-24172285                                         40   0.001
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    27   6.0  
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673...    27   7.9  
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209...    27   7.9  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +3

Query: 111 LKPVNNFNLTAYQGIWYEISKFPNESE-XNGKXSSAEYKLEGDVA-KVKNCISSTASXKY 284
           +K V N +L  Y G WYEI+ FP+  +  +G  + A Y L GD A KV N   +     +
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60

Query: 285 I*GTANLXDDAXXAXKXTXTF 347
           I GTA   D      K    F
Sbjct: 61  IEGTAYRADPVSDEAKLKVKF 81


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +3

Query: 108 ELKPVNNFNLTAYQGIWYEISKFPNESE-XNGKXSSAEYKLEGDVAKV---KNCISSTAS 275
           E+  V   ++  Y G WYEI+  PN  +  +G+ + A Y L  D A V       +S+  
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72

Query: 276 XKYI*GTANLXDDAXXAXKXTXTF 347
             YI GTA   D A    K    F
Sbjct: 73  RDYIKGTAYKADPASDEAKLKVKF 96


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 120 VNNFNLTAYQGIWYEISKFPNESEXNGKXSSAEYKLEGD 236
           V NFN+  + G WY IS   N +         E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>11_06_0684 -
           26264540-26264661,26264926-26264989,26267168-26267371,
           26268322-26268456,26269174-26269492,26269581-26269631,
           26269721-26269864,26270080-26270160,26270252-26270302,
           26270392-26270535,26270750-26270833,26270912-26271055,
           26271147-26271196
          Length = 530

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +1

Query: 142 LTKASGMKSRNFPTNLRXTAXALQLNTNWKVTWRRS-----RTAYHPRRQXSIYKG 294
           + K  G +SRN+  N+R    AL     +++ W R      RT  +   Q +I +G
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIRKHQGNLRTELYAGLQDAIERG 395


>11_06_0275 -
           21818071-21818192,21818457-21818520,21820699-21820902,
           21821852-21821986,21822704-21823022,21823111-21823161,
           21823251-21823394,21823610-21823690,21823782-21823832,
           21823922-21824065,21824280-21824363,21824442-21824585,
           21824677-21824726
          Length = 530

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +1

Query: 142 LTKASGMKSRNFPTNLRXTAXALQLNTNWKVTWRRS-----RTAYHPRRQXSIYKG 294
           + K  G +SRN+  N+R    AL     +++ W R      RT  +   Q +I +G
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIRKHQGNLRTELYAGLQDAIERG 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,537,881
Number of Sequences: 37544
Number of extensions: 153387
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)