Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0499
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    38   0.003
At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ...    28   3.7  
At5g37100.1 68418.m04453 replication protein-related weak simila...    27   8.7  
At3g05150.1 68416.m00559 sugar transporter family protein simila...    27   8.7  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 108 ELKPVNNFNLTAYQGIWYEISKFPNESE-XNGKXSSAEYKLEGD-VAKVKNCISSTASXK 281
           E++ V   N+  Y G WYEI+ FP+  +  NG  + A Y L  D    V N   S     
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 282 YI*GTANLXDDAXXAXKXTXTF 347
           +I G+A   D      K    F
Sbjct: 66  FIEGSAYKADPKSDEAKLKVKF 87


>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
           family / APC10 family contains Pfam PF03256:
           Anaphase-promoting complex, subunit 10 (APC10) domain;
           similar to anaphase promoting complex subunit APC10
           (GI:6463666) [Homo sapiens]
          Length = 192

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 180 NESEXNGKXSSAEYKL--EGDVAKV-KNCISSTASXKYI*GTANLXDD 314
           +ESE  GK S   YKL  + D+ ++ KN   S +S K   G   L DD
Sbjct: 6   SESEEEGKISGGNYKLIIDDDLREMGKNAAWSVSSCKPGNGVTTLRDD 53


>At5g37100.1 68418.m04453 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 269

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 120 VNNFNLTAYQGIWYEISKFP-NESEXNGKXSSAEYKLE 230
           +NNF  + ++G WY I+ F    +    K SS  Y++E
Sbjct: 60  LNNFKPSLFEGKWYYIADFRLKRATSIPKYSSFNYEIE 97


>At3g05150.1 68416.m00559 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 166 SRNFPTNLRXTAXALQLNTNWKVTWRRSRT 255
           S  FP NL+ TA  L    NW  +W  S T
Sbjct: 394 SEIFPINLKGTAGGLVTVVNWLSSWLVSFT 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,653,684
Number of Sequences: 28952
Number of extensions: 121991
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)