Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0496
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    55   6e-09
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   4.5  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   5.9  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 54.8 bits (126), Expect = 6e-09
 Identities = 25/53 (47%), Positives = 32/53 (60%)
 Frame = +3

Query: 312 FTYDELARYNGIENAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
           +T  EL  YNG +N+ + LA+ GT+Y+VT G K Y     Y  F G D SRGL
Sbjct: 43  YTPAELKEYNGSKNSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGL 95


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 95  ILNGSKFKLFCNIEFIYIYSFQVSGLRS 12
           +++GS+F+ FC  E  Y + F  +G+R+
Sbjct: 502 VISGSRFRCFCPKENCY-FMFACAGIRT 528


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 109 LSWIFFRFSHHNKSVTGL*VT*AMKRYSKFILAIVIVLGGVY 234
           +S+ F RFS +  ++  + V  A+ R    ++ I I +GGVY
Sbjct: 54  ISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGVGGVY 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,991
Number of Sequences: 5004
Number of extensions: 28397
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)