Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0496
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0544 - 18655186-18655567,18656835-18657151 47 7e-06
10_08_0543 - 18649894-18650233,18651446-18651981 46 1e-05
03_02_0826 + 11569961-11570301,11572220-11572454 46 1e-05
02_05_0089 - 25715637-25716333,25716481-25717238 46 1e-05
02_05_1047 + 33745656-33745964 42 2e-04
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548... 36 0.023
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693... 32 0.21
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468... 27 6.0
01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56... 27 7.9
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 47.2 bits (107), Expect = 7e-06
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 321 DELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
+EL +Y+G + K L +A+ G IYDVT+ Y G Y F GKD SR L
Sbjct: 77 EELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRAL 127
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 315 TYDELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
T +EL +Y+G + K L +A+ G IYDV++ Y G Y F GKD SR L
Sbjct: 148 TAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRAL 200
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 315 TYDELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
T ++LA Y+G + AK + +A+ G +YDVT+G Y Y F G+D +R L
Sbjct: 83 TLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRAL 135
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 315 TYDELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
T +EL Y+G + N L +A+ G IYDVT+ Y G Y F G+D SR L
Sbjct: 222 TEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRAL 274
>02_05_1047 + 33745656-33745964
Length = 102
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 315 TYDELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
T +L Y+G + +K + ++V G +YDVT G Y G Y F G++ SR L
Sbjct: 6 TAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRAL 58
>03_02_0079 +
5485090-5485238,5486066-5486137,5486764-5486840,
5486946-5486989,5487583-5487639,5487640-5487686,
5488010-5488184,5489501-5489662,5489845-5489883
Length = 273
Score = 35.5 bits (78), Expect = 0.023
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 375 LGTIYDVTKGEKHYAKGATYHYFVG 449
L +++DVTKG+ +Y G YH+F G
Sbjct: 49 LSSVFDVTKGKSNYGPGGGYHHFAG 73
>05_07_0337 -
29368823-29368863,29369011-29369104,29369231-29369347,
29369751-29369804,29369910-29370026,29370170-29370310,
29370402-29370820,29370906-29370934,29371287-29371354,
29371833-29371907
Length = 384
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 336 YNGIENAKLXLAVLGTIYDVTKGEKHYAKG 425
+N +E L LA+L T + + +GE HY KG
Sbjct: 320 FNLLETGSLFLAILVTAFTLQEGESHYLKG 349
>07_01_0627 +
4685077-4685155,4685978-4686336,4686761-4686862,
4687528-4687598,4687871-4687989,4688327-4688422,
4688527-4688636,4688734-4688814,4689124-4689224,
4689663-4689771,4689971-4690076,4690140-4690225,
4690324-4690449,4690816-4690902
Length = 543
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 333 RYNGIENAKLXLAVL---GTIYDV-TKGEKHYAKGATYHYFVGKDGSRGLIT 476
RY + + L L V+ GT+ D+ T K H F+G +GS G++T
Sbjct: 234 RYGSLHGSVLGLEVVLADGTVLDMLTTLRKDNTGYDLKHLFIGSEGSLGIVT 285
>01_01_0074 -
561304-562131,562219-562425,563034-563084,563310-563408,
564476-564622,564750-564851,565713-565928,566061-566192,
566249-566310,567618-567746,568426-568567,568735-568830,
568924-569000,569070-569148,569229-569297,569589-569703,
570614-570777,570847-571002
Length = 956
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 114 LDIFSFQSSQ*ECNGSLSNVSNETLLK 194
LD SF+ S C+ L+N++N+ LLK
Sbjct: 273 LDTLSFELSINRCSEKLANLANDILLK 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,473,258
Number of Sequences: 37544
Number of extensions: 143196
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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