Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0496
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                54   6e-08
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   6e-07
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   5e-04
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  

>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +3

Query: 312 FTYDELARYNGIENAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 476
           FT DEL  Y+G+++  + +AV G ++DVT+G+  Y  G  Y  F G D SRGL T
Sbjct: 61  FTLDELKEYDGLKSPYVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLAT 115


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = +3

Query: 321 DELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITG 479
           ++LA+++G + +A + +A+LG +YDV KG + Y  G  YH F G+D +   +TG
Sbjct: 91  EDLAKHDGSQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTG 144


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +3

Query: 324 ELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 476
           +L +++G++ +A + +A+LG +YDV KG + Y  G  YH F G+D +   +T
Sbjct: 276 DLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVT 327


>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 312 FTYDELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
           FT DELA +NG   N+ + +AV G ++DV+  +  Y  G +Y+   GK+ SR +
Sbjct: 48  FTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSRAI 101


>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 312 FTYDELARYNGIENAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 476
           FT  EL  Y+G+    + +AV G ++DVT    ++          GKD SR L+T
Sbjct: 74  FTVRELKGYDGVNKELIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVT 128


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 312 FTYDELARYNGIENAKLXLAVLGTIYDVT 398
           FT+ +L+R N  +NA   LA+ G +YDVT
Sbjct: 25  FTWQQLSRLNTEQNA--HLAIHGKVYDVT 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,065
Number of Sequences: 59808
Number of extensions: 184687
Number of successful extensions: 411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)