Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0496
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069225-1|AAL39370.1|  287|Drosophila melanogaster GH27237p pro...    64   9e-11
AE014298-1296|AAF46459.1|  287|Drosophila melanogaster CG12056-P...    64   9e-11
AY061163-1|AAL28711.1|  248|Drosophila melanogaster LD12946p pro...    53   2e-07
AE014298-2270|AAF48534.1|  248|Drosophila melanogaster CG9066-PA...    53   2e-07
BT022626-1|AAY55042.1|  192|Drosophila melanogaster IP06960p pro...    38   0.009
AE014134-2348|AAF53300.1|  192|Drosophila melanogaster CG16957-P...    38   0.009
BT024379-1|ABC86441.1|  119|Drosophila melanogaster IP06242p pro...    29   4.4  
AE014296-2648|AAF49529.1|  119|Drosophila melanogaster CG5157-PA...    29   4.4  

>AY069225-1|AAL39370.1|  287|Drosophila melanogaster GH27237p
           protein.
          Length = 287

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
 Frame = +3

Query: 225 RRLLPKRT*HYLS-----SFIRILYXXXXXXXXXFTYDELARYNGIENAK-LXLAVLGTI 386
           R+ L ++T +YL      + I + +         FT  ELA++NG E  + L LA+LG++
Sbjct: 30  RQFLRRQTDNYLDQAGQDASIPLAFQAGDDIGTLFTPAELAKFNGEEEGRPLYLALLGSV 89

Query: 387 YDVTKGEKHYAKGATYHYFVGKDGSRGLITG 479
           +DV++G KHY  G +Y++FVG+D S   I+G
Sbjct: 90  FDVSRGIKHYGSGCSYNFFVGRDASVSFISG 120


>AE014298-1296|AAF46459.1|  287|Drosophila melanogaster CG12056-PA
           protein.
          Length = 287

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
 Frame = +3

Query: 225 RRLLPKRT*HYLS-----SFIRILYXXXXXXXXXFTYDELARYNGIENAK-LXLAVLGTI 386
           R+ L ++T +YL      + I + +         FT  ELA++NG E  + L LA+LG++
Sbjct: 30  RQFLRRQTDNYLDQAGQDASIPLAFQAGDDIGTLFTPAELAKFNGEEEGRPLYLALLGSV 89

Query: 387 YDVTKGEKHYAKGATYHYFVGKDGSRGLITG 479
           +DV++G KHY  G +Y++FVG+D S   I+G
Sbjct: 90  FDVSRGIKHYGSGCSYNFFVGRDASVSFISG 120


>AY061163-1|AAL28711.1|  248|Drosophila melanogaster LD12946p
           protein.
          Length = 248

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +3

Query: 312 FTYDELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 476
           FT  EL +Y+G + + ++ +AV G++YDV+KG + Y  G  Y  F G+D SR L T
Sbjct: 83  FTVKELRQYDGTQPDGRVLVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLAT 138


>AE014298-2270|AAF48534.1|  248|Drosophila melanogaster CG9066-PA
           protein.
          Length = 248

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +3

Query: 312 FTYDELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 476
           FT  EL +Y+G + + ++ +AV G++YDV+KG + Y  G  Y  F G+D SR L T
Sbjct: 83  FTVKELRQYDGTQPDGRVLVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLAT 138


>BT022626-1|AAY55042.1|  192|Drosophila melanogaster IP06960p
           protein.
          Length = 192

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 312 FTYDELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLI 473
           FT  EL  Y+G   + ++ +A+L  IYDV++   +Y +      + G+D SR LI
Sbjct: 73  FTVRELREYDGTRADGRILVAILFNIYDVSRSVHYYGRNGVNPNYAGRDISRILI 127


>AE014134-2348|AAF53300.1|  192|Drosophila melanogaster CG16957-PA
           protein.
          Length = 192

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 312 FTYDELARYNGIE-NAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLI 473
           FT  EL  Y+G   + ++ +A+L  IYDV++   +Y +      + G+D SR LI
Sbjct: 73  FTVRELREYDGTRADGRILVAILFNIYDVSRSVHYYGRNGVNPNYAGRDISRILI 127


>BT024379-1|ABC86441.1|  119|Drosophila melanogaster IP06242p
           protein.
          Length = 119

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 312 FTYDELARYNGIENAKLXLAVLGTIYDVTK--GEKHYAKGATYHYFVGKDGSR 464
           +   E+A+ NG       L + G +YDVTK  GE      A   Y  GKD ++
Sbjct: 5   YELSEVAQQNGKNGKPCWLIIKGNVYDVTKFLGEHPGGSEALLEY-GGKDATK 56


>AE014296-2648|AAF49529.1|  119|Drosophila melanogaster CG5157-PA
           protein.
          Length = 119

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 312 FTYDELARYNGIENAKLXLAVLGTIYDVTK--GEKHYAKGATYHYFVGKDGSR 464
           +   E+A+ NG       L + G +YDVTK  GE      A   Y  GKD ++
Sbjct: 5   YELSEVAQQNGKNGKPCWLIIKGNVYDVTKFLGEHPGGSEALLEY-GGKDATK 56


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,213
Number of Sequences: 53049
Number of extensions: 263942
Number of successful extensions: 405
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)