Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0496
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    51   5e-07
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    51   5e-07
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    51   5e-07

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = +3

Query: 315 TYDELARYNGIENAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 476
           T +EL +Y+G++N  +   + GTIYDVT+G+  Y  G  Y    G D +R L T
Sbjct: 51  TVEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGT 104


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = +3

Query: 315 TYDELARYNGIENAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 476
           T +EL +Y+G++N  +   + GTIYDVT+G+  Y  G  Y    G D +R L T
Sbjct: 66  TVEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGT 119


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
 Frame = +3

Query: 312 FTYDELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITG 479
           FT ++L  ++G  ++K + LA+LG +Y+V   +++Y  G +YH+F G+D +R   TG
Sbjct: 101 FTPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTG 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,983,190
Number of Sequences: 27780
Number of extensions: 152508
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)