Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0496
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein...    62   1e-10
At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein...    54   4e-08
At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein...    47   8e-06
At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein...    45   2e-05

>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
           similar to SP|O15173 Membrane associated progesterone
           receptor component 2 (Steroid receptor protein DG6)
           {Homo sapiens}; contains Pfam profile PF00173:
           Heme/Steroid binding domain
          Length = 245

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = +3

Query: 312 FTYDELARYNGI-ENAKLXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITG 479
           F+ +ELA YNG  E   + L +LG+++DVTKG+ HY  G  Y++F G+D SR  ++G
Sbjct: 42  FSAEELALYNGTDETLPILLGILGSVFDVTKGKFHYGSGGGYNHFAGRDASRAFVSG 98


>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
           similar to SP|P70580 Membrane associated progesterone
           receptor component 1 {Rattus norvegicus}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 100

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = +3

Query: 312 FTYDELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
           FT ++L++YNG + +K + +A+ G ++DVT G+  Y  G  Y  F GKD SR L
Sbjct: 3   FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRAL 56


>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
           similar to SP|O00264 Membrane associated progesterone
           receptor component (mPR) {Homo sapiens}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 233

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 315 TYDELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
           T +EL  Y+G ++ K L +A+ G IYDV++    Y  G  Y  F GKD SR L
Sbjct: 72  TEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRAL 124


>At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein
           similar to SP|P70580 Membrane associated progesterone
           receptor component 1 {Rattus norvegicus}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 220

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 315 TYDELARYNGIENAK-LXLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 470
           T +EL +Y+G +  K L +A+   IYDVT+    Y  G  Y  F GKD SR L
Sbjct: 76  TEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRAL 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,287,011
Number of Sequences: 28952
Number of extensions: 134357
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)