Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0493
         (480 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   5.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.8  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   7.8  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 341 PSPNSLELCEMLPRERPEA 397
           P  N  E   + PRERP A
Sbjct: 302 PGQNPGEKTNIAPRERPRA 320


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 342 PHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHT 443
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  VLAQALTDEQKENLKKHRADCLSE 117
           ++ Q + DE++++  KH A  L+E
Sbjct: 121 IVPQNVLDEEEKSSTKHYAALLTE 144


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 413 LQEKSVLRVFLVVAFHI 363
           L+EK  +++FL   FHI
Sbjct: 484 LREKPDVKIFLPFRFHI 500


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 123 FRLGETVGSVFLQVLLLLICE 61
           ++L   VGS     L LLIC+
Sbjct: 3   YQLTACVGSAIAGFLFLLICD 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,852
Number of Sequences: 336
Number of extensions: 2214
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)