Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0493
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.9  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   3.4  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   4.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   7.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   7.8  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 10  IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 186
           I+ TF++FVV ++L + L      ++ K+ +  + +    E    KL  GD F+    P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 46  VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 198
           V +  +TD    N+ +     L E   + + ++K KT DFK +   +  YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 22  FIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 168
           F+V  V V  A  LTDE+K  L K R +  S +   E+L  K     FK
Sbjct: 238 FLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 305 LLYFQFVFSIRHFSQSDSFLNFPS---LVISCDLISIHRAYFFNGSFSVLKSPVFSL 144
           LL+F F+     FS S SFL F S   +V       +H  +FF     V  S +FSL
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSL 173


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 239 PSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCS 129
           P +V+  DL++  +  + +    VL + +FSLF   S
Sbjct: 525 PCIVLLLDLLNSQKIIYLDDERVVLLNKIFSLFPRSS 561


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -1

Query: 192 LLQWFVFSLKV--ACLQFVHQLFISFRLGETVGSVFLQVLLLLICEGLSQDNADDEHDKS 19
           LL+  +  LKV  A +  V Q  I F   +   S+FL+ +L+++C+ L ++       ++
Sbjct: 582 LLESKISDLKVRLALIDLVSQYVILFYEPD-FDSIFLRRVLIILCKKLQEEPTRSAAARA 640

Query: 18  LHDL 7
           L D+
Sbjct: 641 LCDI 644


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 272 HFSQSDSFLNFPSLVISCDLISIHRAYFFNGSFSVL 165
           HFS++     FP+L++ C    + R +  + S S++
Sbjct: 217 HFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSII 252


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -3

Query: 313 SISFSTFNLSSALGTLARATPS*ISRPWSSAVI*SAYIEHTSSMVRFQS*-SRLSSVCSP 137
           S S ST + S     +     S  S P SS+   S+ I   SS +   S  S  SSV S 
Sbjct: 520 STSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSI 579

Query: 136 IVHQLSSRRDSRLCVSSSSPSA 71
           +    SS   + L +SSSS S+
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSS 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,292
Number of Sequences: 5004
Number of extensions: 39384
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)