Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0493
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   2.0  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    29   2.0  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    28   4.5  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +3

Query: 15  EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 122
           EDF+R  ++RL+ LG  P     GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = +3

Query: 135 IGEQTEDRRL*D*KRTIEEVCSMYADQITADDQGREIQEGVALAKVPNAEDKL------- 293
           +GE  E+R++    R  E+   +  +++    +  E+QE  +  K    ++K+       
Sbjct: 236 VGEDPEERQMVSLNRLFEKHRDVSLNRLLEKHRDEEMQESCSTDKEGEEDEKIDTLSFEQ 295

Query: 294 KVEKLIDACLANKGNSPHQTAWNYVKC 374
            + K+    L N  N+P+Q +   V+C
Sbjct: 296 SILKITSMKLGNLWNNPNQLSEEMVRC 322


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 174 KRTIEEVCSMYADQITADDQGREIQEGVALAKVPNAEDKL 293
           K T+EE+ S+Y ++   DD+  E QE +   +V     KL
Sbjct: 295 KETMEEIESLYDEESRLDDEIMEAQEKLNALRVDEDRRKL 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,940
Number of Sequences: 37544
Number of extensions: 247442
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)