Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0493
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.86 
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)             29   2.6  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   4.6  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   4.6  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               27   8.0  
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 410
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 187 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 56
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
          Length = 283

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +3

Query: 222 ADDQGREIQEGVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHA 401
           A+ +G EI   V      +  D L+ +K++D  L ++      TA +YV+ YHE   KH+
Sbjct: 175 AEKEGSEI---VGYKTFQDMADALE-KKIVDGILIDR-----YTAGSYVRHYHENKLKHS 225

Query: 402 LFL*THNPTQPFHTSLVLNSS 464
           L   +H          V++S+
Sbjct: 226 LISASHVQISGQQIGFVISSN 246


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 135 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 22
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 187  KKYALCMLIKSQLMTKDGKFKKESLWLKCLMLK 285
            ++ ALC +I+++L+TKDG+   ++  + C  L+
Sbjct: 1175 RRNALCEVIENRLVTKDGRSLSQAGRILCYRLR 1207


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 174 KRTIEEVCSMYADQITADDQGREIQEGVALAKVPNAEDKLKVEKLID 314
           K+T + + +    +ITA    + + +GV+L K+  A D +   KL++
Sbjct: 332 KKTHKPLYTSLKHEITARSSHKPLTDGVSLRKIQLASDVVPSSKLLE 378


>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 195 CSMYADQITADDQGREIQEGVALAKVPNAEDKLKVEKLIDACLANKG 335
           C  Y  +    D  + I EG  + + PN E  L  + L+     NKG
Sbjct: 51  CGFYYTEEQVLDIRKAIPEGTRVNEFPNCEHDLITKPLVSGSEKNKG 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,481,035
Number of Sequences: 59808
Number of extensions: 287637
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)