Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0493
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    32   0.23 
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.30 
At3g19900.1 68416.m02520 expressed protein                             29   1.2  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   2.1  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    28   2.8  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    28   2.8  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    28   2.8  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   5.0  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   5.0  
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    27   6.5  
At2g36200.1 68415.m04444 kinesin motor protein-related                 27   8.7  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 67  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 243
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 402 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 307
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At3g19900.1 68416.m02520 expressed protein
          Length = 222

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 153 LQFVHQLFISFRLGETVGSVFLQVLLLLICEGLSQDNADDEHDKSLHD 10
           L F H L +    G+T    F ++  ++  EG + DN+DDE  +SL D
Sbjct: 42  LAFSHSLCLKTTYGKTDRRKFSRICSIVDDEG-NLDNSDDEEKESLDD 88


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 423 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 331
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 213
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296

Query: 214 KSQLMTKDGKFKK 252
            S    KDG  KK
Sbjct: 297 VSSFEEKDGFLKK 309


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 213
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421

Query: 214 KSQLMTKDGKFKK 252
            S    KDG  KK
Sbjct: 422 VSSFEEKDGFLKK 434


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 103  DCLSETKADEQLV--NKLK-TGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKESLW 264
            D L  +K  + +V  N+LK T   KT     KK+   M IK  LM K  K KK +LW
Sbjct: 1610 DELEPSKPSDSMVVDNELKLTNRGKTVG---KKFITSMPIKRVLMIKPEKLKKGNLW 1663


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 314 RLPGQQRQQPSPNSLELCEMLPRERPE 394
           R P ++R++ +PN+LE    LP++  E
Sbjct: 114 RAPAKEREEIAPNTLENVSKLPKQHQE 140


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 276 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 383
           ++  KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 94  HRADCLSETKADEQLVNKLKT-GDFKTENEPLKKYALCML 210
           H  D + E  +    + K++T GD+K EN  L +Y  C+L
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVL 266


>At2g36200.1 68415.m04444 kinesin motor protein-related 
          Length = 1056

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 55  QALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPL 186
           Q    EQ  NL    A CLS+     Q VNKL     +  N+ +
Sbjct: 542 QVELSEQISNLFNRVASCLSQQNVHLQGVNKLSQSRLEAHNKAI 585


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,235,838
Number of Sequences: 28952
Number of extensions: 208639
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)