Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0489
         (482 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q236R6 Cluster: Putative uncharacterized protein; n=1; ...    32   5.9  
UniRef50_A5K9K8 Cluster: Putative uncharacterized protein; n=1; ...    32   5.9  

>UniRef50_Q236R6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1555

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 387 INSHXFIKKSSMTS*NVECKYCLQLN*CNQRNXGLSYYFVKQESQQNCVC 238
           I+ H F K +++    + CK CL  N C   N   +Y FV+ E + N  C
Sbjct: 79  IDGHYFDKSNNLQKCPINCKKCLNSNNCLDCNE--NYSFVQGECECNGTC 126


>UniRef50_A5K9K8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 820

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  SCI*CMNTNYCFNKTFKYNLLCDFNVSRN 145
           SC  C N ++C+N    YN  C +N  RN
Sbjct: 430 SCNHCYNYDHCYNYDHCYNYSCSYNYDRN 458


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,192,970
Number of Sequences: 1657284
Number of extensions: 6420344
Number of successful extensions: 11011
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11006
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)