Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0489
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   1.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.0  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   6.0  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +3

Query: 216 VNFNCSENKHNFVVTPA-----LRSSMTNQXFVDCINL 314
           VN+N SE   NF   PA     L+ ++  + F + +NL
Sbjct: 54  VNYNVSEISENFYYLPAMSTGPLKYAIFQKNFTNIVNL 91



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 383 FIYXCIIQSRTSHLQVSTQLXRIVSII 463
           F Y C+IQ  T    VS  L  +  I+
Sbjct: 188 FFYTCLIQIETQCEIVSDTLRNLDKIV 214


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 286 FVILLRKAGVTTKLCLFSEQLKLTCKCN 203
           FV++L++     K C+ ++ +K  CK N
Sbjct: 187 FVVVLKQ-----KFCVVNQYIKQVCKLN 209


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 286 FVILLRKAGVTTKLCLFSEQLKLTCKCN 203
           FV++L++     K C+ ++ +K  CK N
Sbjct: 12  FVVVLKQ-----KFCVVNQYIKQVCKLN 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,476
Number of Sequences: 336
Number of extensions: 2086
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)