Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0489
         (482 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063634-1|AAH63634.1|  686|Homo sapiens MAM domain containing 2...    29   8.6  
BC016383-1|AAH16383.1|  686|Homo sapiens MAM domain containing 2...    29   8.6  
AL392044-1|CAH71143.1|  686|Homo sapiens MAM domain containing 2...    29   8.6  
AL158153-1|CAH73080.1|  686|Homo sapiens MAM domain containing 2...    29   8.6  

>BC063634-1|AAH63634.1|  686|Homo sapiens MAM domain containing 2
           protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 74  MNTNYCFNKTFKYNLLCDFNVSRNNPN 154
           M T YC    F+ N LC F V+R NPN
Sbjct: 162 MTTGYCIECDFEENHLCGF-VNRWNPN 187


>BC016383-1|AAH16383.1|  686|Homo sapiens MAM domain containing 2
           protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 74  MNTNYCFNKTFKYNLLCDFNVSRNNPN 154
           M T YC    F+ N LC F V+R NPN
Sbjct: 162 MTTGYCIECDFEENHLCGF-VNRWNPN 187


>AL392044-1|CAH71143.1|  686|Homo sapiens MAM domain containing 2
           protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 74  MNTNYCFNKTFKYNLLCDFNVSRNNPN 154
           M T YC    F+ N LC F V+R NPN
Sbjct: 162 MTTGYCIECDFEENHLCGF-VNRWNPN 187


>AL158153-1|CAH73080.1|  686|Homo sapiens MAM domain containing 2
           protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 74  MNTNYCFNKTFKYNLLCDFNVSRNNPN 154
           M T YC    F+ N LC F V+R NPN
Sbjct: 162 MTTGYCIECDFEENHLCGF-VNRWNPN 187


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,207,568
Number of Sequences: 237096
Number of extensions: 894500
Number of successful extensions: 1135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)