Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0489
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   5.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 475 YDGIDNGYNTX*LCRNLQMACAGLYYTXIN 386
           Y+  +N YN      N    C  LYY  IN
Sbjct: 331 YNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 186 ISNNVKISIKVLGLFL 139
           ISNN ++ +  LG F+
Sbjct: 541 ISNNEQVKVSALGFFI 556


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 95  NKTFKYNLLCDFNVSRNNPN 154
           N  +KYN    +N + NN N
Sbjct: 93  NNNYKYNYNNKYNYNNNNYN 112


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 186 ISNNVKISIKVLGLFL 139
           ISNN ++ +  LG F+
Sbjct: 541 ISNNEQVKVSALGFFI 556


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 77  NTNYCFNKTFKYNLLC 124
           NT YC   T +   LC
Sbjct: 144 NTRYCLTPTERLEALC 159


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 77  NTNYCFNKTFKYNLLC 124
           NT YC   T +   LC
Sbjct: 197 NTRYCLTPTERLEALC 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,206
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)