Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0488
         (467 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q04D13 Cluster: Predicted multitransmembrane protein; n...    32   5.4  
UniRef50_UPI000150A999 Cluster: hypothetical protein TTHERM_0040...    31   9.5  
UniRef50_A5CDB4 Cluster: Transposase and inactivated derivative;...    31   9.5  
UniRef50_A4MY15 Cluster: Long-chain-fatty-acid--CoA ligase; n=1;...    31   9.5  
UniRef50_A1ZGN6 Cluster: Putative uncharacterized protein; n=1; ...    31   9.5  

>UniRef50_Q04D13 Cluster: Predicted multitransmembrane protein; n=2;
           Oenococcus oeni|Rep: Predicted multitransmembrane
           protein - Oenococcus oeni (strain BAA-331 / PSU-1)
          Length = 258

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 16/44 (36%), Positives = 30/44 (68%)
 Frame = -1

Query: 326 DGAHYLVLHIILHVVFQLIFYSQLCKIASRS*LFSNISY*FLCY 195
           +G ++  +  IL +VF LIF ++L KIAS++ L+S++    +C+
Sbjct: 48  NGIYFFGIIGILFLVFSLIFVNKLDKIASKTILYSSLVVYPICF 91


>UniRef50_UPI000150A999 Cluster: hypothetical protein
           TTHERM_00402050; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00402050 - Tetrahymena
           thermophila SB210
          Length = 556

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 251 YKVANKKLTGKLHGELYAIQDNELHQMNSNETKLFTIQIRL 373
           Y+V  +K T KL G++ A     L QM  NETK F ++ +L
Sbjct: 292 YRVVKEKRTVKLQGDISAKWYICLEQMKPNETKWFKMEQKL 332


>UniRef50_A5CDB4 Cluster: Transposase and inactivated derivative;
           n=4; Orientia tsutsugamushi Boryong|Rep: Transposase and
           inactivated derivative - Orientia tsutsugamushi (strain
           Boryong) (Rickettsia tsutsugamushi)
          Length = 291

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 236 SD*RFYKVANKKLTGKLHGELYAIQDNELHQMNSNETKLFT 358
           SD     V +K L+GKL G+   I     HQ+ SN  +LFT
Sbjct: 171 SDLSMASVISKGLSGKLFGDKAYISKKLFHQLLSNALRLFT 211


>UniRef50_A4MY15 Cluster: Long-chain-fatty-acid--CoA ligase; n=1;
           Haemophilus influenzae 22.1-21|Rep:
           Long-chain-fatty-acid--CoA ligase - Haemophilus
           influenzae 22.1-21
          Length = 291

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +3

Query: 351 CLPSKFDCRADRKRXFTHS 407
           CLPSK DCRA   R F+HS
Sbjct: 236 CLPSKMDCRAIYWRSFSHS 254


>UniRef50_A1ZGN6 Cluster: Putative uncharacterized protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative
           uncharacterized protein - Microscilla marina ATCC 23134
          Length = 457

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +2

Query: 245 RFYKVANKKLTGKLHGELYAIQDNELHQMNSNETKLFTIQIRLPG 379
           RF+K  NKK   KL    YA   N LHQ+   E K     + L G
Sbjct: 24  RFHKKQNKKYLKKLVWSAYANTINGLHQLYHQEVKAENASLLLQG 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,096,291
Number of Sequences: 1657284
Number of extensions: 5895029
Number of successful extensions: 10719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10715
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)