Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0488
         (467 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   4.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.3  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   5.7  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   5.7  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 227 FSNISY*FLCYKMHLLLSYINIIVE 153
           + N+    + +   LLL+YIN ++E
Sbjct: 38  YDNVDVDRILHSKRLLLNYINCLLE 62


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/45 (22%), Positives = 17/45 (37%)
 Frame = +3

Query: 276 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRXFTHSE 410
           ++ YM    Q   +     + M+P C+  +  C   RK      E
Sbjct: 232 IDMYMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKE 276


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 191 FYNTKINMKYY*TITSD*RFYKVANKKLTGKLHGELYAI 307
           +YN  ++      ++   R Y +  KKL+ K   EL A+
Sbjct: 353 YYNYTVDRDLQDEVSQKIRKYYLGEKKLSKKTFRELVAM 391


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 191 FYNTKINMKYY*TITSD*RFYKVANKKLTGKLHGELYAI 307
           +YN  ++      ++   R Y +  KKL+ K   EL A+
Sbjct: 353 YYNYTVDRDLQDEVSQKIRKYYLGEKKLSKKTFRELVAM 391


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,070
Number of Sequences: 336
Number of extensions: 1737
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)