Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0488
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755...    27   7.5  

>03_05_0728 -
           27174157-27174408,27175316-27175364,27175454-27175536,
           27175673-27175753,27175838-27175894,27176103-27176202,
           27176280-27176350,27176427-27176567,27176657-27176863,
           27177442-27177612,27177735-27177815,27177887-27177940,
           27178040-27178154,27178302-27178441,27178976-27179197,
           27179278-27179376,27179461-27179580,27179776-27179981,
           27180072-27180249,27180426-27180486,27180587-27180696,
           27180765-27180896,27181124-27181165,27181592-27181762,
           27181806-27181808,27181848-27181974,27182130-27182164,
           27182982-27183083,27183167-27183224,27183314-27183415,
           27183513-27183659,27183744-27183880,27183973-27184122,
           27184234-27184393,27184930-27185075,27185162-27185305,
           27185535-27185663,27186376-27186420,27187103-27187192,
           27187473-27187475
          Length = 1506

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 284 LHGELYAIQDNELHQMNSNETKLFT 358
           + GE+ +I+DNE+H   SN  K+ T
Sbjct: 68  IDGEVVSIKDNEVHVQTSNGKKVKT 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,437,201
Number of Sequences: 37544
Number of extensions: 147882
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)