Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0488
         (467 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA...    29   2.4  
U91980-1|AAC47506.1| 2346|Drosophila melanogaster Tpr homolog pr...    28   5.5  
AE014135-39|AAF59363.2| 1459|Drosophila melanogaster CG31998-PA ...    28   5.5  
AY071642-1|AAL49264.1|  689|Drosophila melanogaster RE68569p pro...    27   9.6  
AE014134-3609|EAA46015.1|  689|Drosophila melanogaster CG40006-P...    27   9.6  

>AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA
            protein.
          Length = 2346

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +2

Query: 245  RFYKVANK-----KLTGKLHGELYAIQDNELHQMNSNETKLFT 358
            +FYK++       K   +LHGEL A Q+ E+ ++ S+E +L T
Sbjct: 963  QFYKMSQSAESEIKRLHELHGELVAKQEEEIKKLRSSEAELKT 1005


>U91980-1|AAC47506.1| 2346|Drosophila melanogaster Tpr homolog
            protein.
          Length = 2346

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +2

Query: 245  RFYKVANK-----KLTGKLHGELYAIQDNELHQMNSNETKLFT 358
            +FYK++       K   +LHGEL + Q+ E+ ++ S+E +L T
Sbjct: 963  QFYKMSQSAESEIKRLHELHGELVSKQEEEIKKLRSSEAELKT 1005


>AE014135-39|AAF59363.2| 1459|Drosophila melanogaster CG31998-PA
           protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 230 LFSNISY*FLCYKMHLLLSYINIIVELNLQSKSPYEIRSSHNKLY 96
           L   I Y F+C  + LL  YI  I++  L+SKS   I    N  Y
Sbjct: 797 LICQIIYIFICLSLGLLYLYIYRILKRILRSKSQNYIHGYQNLSY 841


>AY071642-1|AAL49264.1|  689|Drosophila melanogaster RE68569p
           protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 251 YKVANKKLTGKLHGELYAIQDNELHQMNSNE 343
           Y+V N+K  G L G  Y  +DN      +NE
Sbjct: 366 YRVGNEKTYGSLKGYNYVFEDNAFDNGATNE 396


>AE014134-3609|EAA46015.1|  689|Drosophila melanogaster CG40006-PA
           protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 251 YKVANKKLTGKLHGELYAIQDNELHQMNSNE 343
           Y+V N+K  G L G  Y  +DN      +NE
Sbjct: 366 YRVGNEKTYGSLKGYNYVFEDNAFDNGATNE 396


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,598
Number of Sequences: 53049
Number of extensions: 273840
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)