Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0487
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   2.6  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.6  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    24   6.1  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    24   8.0  

>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 178 NSITTGTIEVVVPT 137
           N  T+GT+EVV+PT
Sbjct: 218 NGTTSGTVEVVIPT 231



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 178 NSITTGTIEVVVPT 137
           N  T+GT+EVV+PT
Sbjct: 253 NGTTSGTVEVVIPT 266



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 178 NSITTGTIEVVVPT 137
           N  T+GT+EVV+PT
Sbjct: 393 NGTTSGTVEVVIPT 406


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 267 TKLWQYHRIXINPLVYYDSSIIFTSTEENKIL 172
           +K W +  + ++PL +  S I+F      KI+
Sbjct: 215 SKCWAFTSLLVDPLHFMFSQIVFEDLSGKKIM 246


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 212 HQLFSLQLRKIKFYHHRYHRSRSTYLSQQIIILXM 108
           +QLF L+L+K     +R H S   Y  QQ+++  M
Sbjct: 638 NQLFELELKKFDPLRNRLHAS---YRQQQLLLNEM 669


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 273 VLTKLWQYHRIXINPLVYYDS 211
           VL++ WQY  I +N +  Y+S
Sbjct: 193 VLSESWQYKEIPLNGIEGYES 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,039
Number of Sequences: 5004
Number of extensions: 17880
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)