Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0487
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical ...    29   1.3  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    26   6.7  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    26   8.9  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    26   8.9  
U41271-4|AAA82445.3|  262|Caenorhabditis elegans Hypothetical pr...    26   8.9  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    26   8.9  

>AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical
           protein Y40C5A.1 protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 182 IKFYHHRYHRSRSTYLSQ 129
           + FYH+ YHRS+  YL++
Sbjct: 31  VSFYHNNYHRSKILYLNK 48


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 237 INPLVYYDSSIIFTST-EENKILSPPVPSKS 148
           +N L+ ++  +    T EEN +LSP  PS S
Sbjct: 59  VNDLISFEEDLNLPGTSEENSLLSPDSPSSS 89


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
          protein K08E5.3a protein.
          Length = 3767

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 60 FLNITPFFTINCXNSXSC 7
          FL+I P F +NC NS SC
Sbjct: 11 FLHI-PIFFVNCSNSTSC 27


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
          protein K08E5.3a protein.
          Length = 3767

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 60 FLNITPFFTINCXNSXSC 7
          FL+I P F +NC NS SC
Sbjct: 11 FLHI-PIFFVNCSNSTSC 27


>U41271-4|AAA82445.3|  262|Caenorhabditis elegans Hypothetical
           protein C46H3.3 protein.
          Length = 262

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 218 MIHQLFSLQLRKIKF-YHHRYHRSRSTYL---SQQIIILXMIV 102
           M+ +LFS  LRKI F Y    H + + +L   S Q+ IL M++
Sbjct: 145 MLERLFSCGLRKINFQYMDHLHTASAFHLAAGSGQVQILSMLL 187


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
          cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 60 FLNITPFFTINCXNSXSC 7
          FL+I P F +NC NS SC
Sbjct: 11 FLHI-PIFFVNCSNSTSC 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,357,474
Number of Sequences: 27780
Number of extensions: 94403
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)