Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0487
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   7.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   7.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   7.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   7.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   7.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   7.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   7.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   7.6  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    20   7.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 140 RYYDFDGTGGDRILFSSVEVKIIDES 217
           R  DF   G  R+ FSSV+  ++DE+
Sbjct: 333 RLLDFVEKG--RVKFSSVQFLVLDEA 356


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 209 QLFSLQLRKIKFYHHRYHRSRSTYLSQQI 123
           Q+ + +LRKIK   HR    + T  S ++
Sbjct: 119 QVSATELRKIKVDIHRVLPGKPTTTSDEL 147


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +2

Query: 251 YCQSFVNTIYTI 286
           YC+++ N+IY +
Sbjct: 66  YCETYKNSIYDV 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,668
Number of Sequences: 438
Number of extensions: 1275
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)